Volume 19; Issue Suppl 1

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Bioinformatics
Volume 19; Issue Suppl 1

Bioinformatics

Volume 19; Issue Suppl 1

1

Protein structure prediction via combinatorial assembly of sub-structural units

Inbar, Y., Benyamini, H., Nussinov, R., Wolfson, H. J.

Journal:

Year:

2003

Language:

english

File:

PDF, 1.13 MB

english, 2003

2

Evaluation of text data mining for database curation: lessons learned from the KDD Challenge Cup

Yeh, A. S., Hirschman, L., Morgan, A. A.

Journal:

Year:

2003

Language:

english

File:

PDF, 142 KB

english, 2003

3

Linking genotype to phenotype: the International Rice Information System (IRIS)

Bruskiewich, R. M., Cosico, A. B., Eusebio, W., Portugal, A. M., Ramos, L. M., Reyes, Ma. T., Sallan, M. A. B., Ulat, V. J. M., Wang, X., McNally, K. L., Sackville Hamilton, R., McLaren, C. G.

Journal:

Year:

2003

Language:

english

File:

PDF, 1.04 MB

english, 2003

4

Scaling up accurate phylogenetic reconstruction from gene-order data

Tang, J., Moret, B. M.E.

Journal:

Year:

2003

Language:

english

File:

PDF, 120 KB

english, 2003

5

myGrid: personalised bioinformatics on the information grid

Stevens, R. D., Robinson, A. J., Goble, C. A.

Journal:

Year:

2003

Language:

english

File:

PDF, 122 KB

english, 2003

6

Predicting phenotype from patterns of annotation

King, O. D., Lee, J. C., Dudley, A. M., Janse, D. M., Church, G. M., Roth, F. P.

Journal:

Year:

2003

Language:

english

File:

PDF, 149 KB

english, 2003

7

GENIA corpus--a semantically annotated corpus for bio-textmining

Kim, J.-D., Ohta, T., Tateisi, Y., Tsujii, J.

Journal:

Year:

2003

Language:

english

File:

PDF, 209 KB

english, 2003

8

APDB: a novel measure for benchmarking sequence alignment methods without reference alignments

O'Sullivan, O., Zehnder, M., Higgins, D., Bucher, P., Grosdidier, A., Notredame, C.

Journal:

Year:

2003

Language:

english

File:

PDF, 344 KB

english, 2003

9

ISMB 2003

Journal:

Year:

2003

Language:

english

File:

PDF, 39 KB

english, 2003

10

Identification of functional clusters of transcription factor binding motifs in genome sequences: the MSCAN algorithm

Johansson, O., Alkema, W., Wasserman, W. W., Lagergren, J.

Journal:

Year:

2003

Language:

english

File:

PDF, 114 KB

english, 2003

11

Using hidden Markov models to analyze gene expression time course data

Schliep, A., Schonhuth, A., Steinhoff, C.

Journal:

Year:

2003

Language:

english

File:

PDF, 522 KB

english, 2003

12

A probabilistic method to detect regulatory modules

Sinha, S., van Nimwegen, E., Siggia, E. D.

Journal:

Year:

2003

Language:

english

File:

PDF, 155 KB

english, 2003

13

Bayesian gene/species tree reconciliation and orthology analysis using MCMC

Arvestad, L., Berglund, A.-C., Lagergren, J., Sennblad, B.

Journal:

Year:

2003

Language:

english

File:

PDF, 321 KB

english, 2003

14

Combining NLP and probabilistic categorisation for document and term selection for Swiss-Prot medical annotation

Dobrokhotov, P. B., Goutte, C., Veuthey, A.-L., Gaussier, E.

Journal:

Year:

2003

Language:

english

File:

PDF, 92 KB

english, 2003

15

An ENSEMBLE machine learning approach for the prediction of all-alpha membrane proteins

Martelli, P. L., Fariselli, P., Casadio, R.

Journal:

Year:

2003

Language:

english

File:

PDF, 146 KB

english, 2003

16

Glocal alignment: finding rearrangements during alignment

Brudno, M., Malde, S., Poliakov, A., Do, C. B., Couronne, O., Dubchak, I., Batzoglou, S.

Journal:

Year:

2003

Language:

english

File:

PDF, 137 KB

english, 2003

17

Genome-wide discovery of transcriptional modules from DNA sequence and gene expression

Segal, E., Yelensky, R., Koller, D.

Journal:

Year:

2003

Language:

english

File:

PDF, 381 KB

english, 2003

18

MASS: multiple structural alignment by secondary structures

Dror, O., Benyamini, H., Nussinov, R., Wolfson, H.

Journal:

Year:

2003

Language:

english

File:

PDF, 439 KB

english, 2003

19

Processing of natural language queries to a relational database

Samsonova, M., Pisarev, A., Blagov, M.

Journal:

Year:

2003

Language:

english

File:

PDF, 127 KB

english, 2003

20

SNP and mutation discovery using base-specific cleavage and MALDI-TOF mass spectrometry

Journal:

Year:

2003

Language:

english

File:

PDF, 171 KB

english, 2003

21

STRUCLA: a WWW meta-server for protein structure comparison and evolutionary classification

Sasin, J. M., Kurowski, M. A., Bujnicki, J. M.

Journal:

Year:

2003

Language:

english

File:

PDF, 72 KB

english, 2003

22

Sensitive pattern discovery with 'fuzzy' alignments of distantly related proteins

Heger, A., Holm, L.

Journal:

Year:

2003

Language:

english

File:

PDF, 520 KB

english, 2003

23

Combining multiple microarray studies and modeling interstudy variation

Choi, J. K., Yu, U., Kim, S., Yoo, O. J.

Journal:

Year:

2003

Language:

english

File:

PDF, 772 KB

english, 2003

24

Fast identification and statistical evaluation of segmental homologies in comparative maps

Calabrese, P. P., Chakravarty, S., Vision, T. J.

Journal:

Year:

2003

Language:

english

File:

PDF, 110 KB

english, 2003

25

Extracting synonymous gene and protein terms from biological literature

Yu, H., Agichtein, E.

Journal:

Year:

2003

Language:

english

File:

PDF, 149 KB

english, 2003

26

Extraction of correlated gene clusters from multiple genomic data by generalized kernel canonical correlation analysis

Yamanishi, Y., Vert, J.-P., Nakaya, A., Kanehisa, M.

Journal:

Year:

2003

Language:

english

File:

PDF, 141 KB

english, 2003

27

Detection and validation of single gene inversions

Lefebvre, J.F., El-Mabrouk, N., Tillier, E., Sankoff, D.

Journal:

Year:

2003

Language:

english

File:

PDF, 519 KB

english, 2003

28

GeneLoc: exon-based integration of human genome maps

Rosen, N., Chalifa-Caspi, V., Shmueli, O., Adato, A., Lapidot, M., Stampnitzky, J., Safran, M., Lancet, D.

Journal:

Year:

2003

Language:

english

File:

PDF, 112 KB

english, 2003

29

Gene structure-based splice variant deconvolution using a microarry platform

Wang, H., Hubbell, E., Hu, J.-s., Mei, G., Cline, M., Lu, G., Clark, T., Siani-Rose, M. A., Ares, M., Kulp, D. C., Haussler, D.

Journal:

Year:

2003

Language:

english

File:

PDF, 148 KB

english, 2003

30

Chain functions and scoring functions in genetic networks

Gat-Viks, I., Shamir, R.

Journal:

Year:

2003

Language:

english

File:

PDF, 157 KB

english, 2003

31

Using guide trees to construct multiple-sequence evolutionary HMMs

Journal:

Year:

2003

Language:

english

File:

PDF, 202 KB

english, 2003

32

Pair hidden Markov models on tree structures

Journal:

Year:

2003

Language:

english

File:

PDF, 142 KB

english, 2003

33

Methods for optimizing antiviral combination therapies

Beerenwinkel, N., Lengauer, T., Daumer, M., Kaiser, R., Walter, H., Korn, K., Hoffmann, D., Selbig, J.

Journal:

Year:

2003

Language:

english

File:

PDF, 176 KB

english, 2003

34

Talisman--rapid application development for the grid

Journal:

Year:

2003

Language:

english

File:

PDF, 66 KB

english, 2003

35

ISMB 2003 Organization

Journal:

Year:

2003

Language:

english

File:

PDF, 58 KB

english, 2003

36

Remote homology detection: a motif based approach

Ben-Hur, A., Brutlag, D.

Journal:

Year:

2003

Language:

english

File:

PDF, 153 KB

english, 2003

37

Annotation of bacterial genomes using improved phylogenomic profiles

Enault, F., Suhre, K., Abergel, C., Poirot, O., Claverie, J.-M.

Journal:

Year:

2003

Language:

english

File:

PDF, 87 KB

english, 2003

38

Complexity management in visualizing protein interaction networks

Ju, B.-H., Han, K.

Journal:

Year:

2003

Language:

english

File:

PDF, 183 KB

english, 2003

39

PSI: indexing protein structures for fast similarity search

Camoglu, O., Kahveci, T., Singh, A. K.

Journal:

Year:

2003

Language:

english

File:

PDF, 116 KB

english, 2003

40

Discovering molecular pathways from protein interaction and gene expression data

Segal, E., Wang, H., Koller, D.

Journal:

Year:

2003

Language:

english

File:

PDF, 504 KB

english, 2003

41

Detecting protein sequence conservation via metric embeddings

Halperin, E., Buhler, J., Karp, R., Krauthgamer, R., Westover, B.

Journal:

Year:

2003

Language:

english

File:

PDF, 131 KB

english, 2003

42

The discovery net system for high throughput bioinformatics

Rowe, A., Kalaitzopoulos, D., Osmond, M., Ghanem, M., Guo, Y.

Journal:

Year:

2003

Language:

english

File:

PDF, 171 KB

english, 2003